Publications of Vebjorn Ljosa

Tammy Riklin-Raviv, Vebjorn Ljosa, Annie L. Conery, Frederick M. Ausubel, Anne E. Carpenter, Polina Golland, and Carolina Wählby:
“Morphology-Guided Graph Search for Untangling Objects: C. elegans Analysis,”
in Proceedings of the 13th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), September, 2010.
To appear.
Abstract | Paper (PDF)

Carolina Wählby, Tammy Riklin-Raviv, Vebjorn Ljosa, Annie L. Conery, Polina Golland, Frederick M. Ausubel, and Anne E. Carpenter:
“Resolving clustered worms via probabilistic shape models,”
in Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), p. 552–555, April, 2010, doi:10.1109/ISBI.2010.5490286.
Abstract | Paper (PDF) | Publisher's page

Vebjorn Ljosa and Anne E. Carpenter:
“Introduction to the Quantitative Analysis of Two-Dimensional Fluorescence Microscopy Images for Cell-Based Screening,”
PLoS Computational Biology, 5(12):e10000603, 2009, doi:10.1371/journal.pcbi.1000603.
Abstract | Paper (PDF) | Publisher's page

Vebjorn Ljosa, Piyush B. Gupta, Thouis R. Jones, Eric S. Lander, and Anne E. Carpenter:
“Large-scale learning of cellular phenotypes from images,”
in RECOMB Systems Biology, 2009.
Peer-reviewed abstract and talk
Paper (PDF) | Slides (PDF) | Movie

Arnab Bhattacharya and Vebjorn Ljosa:
“Image Management for Biological Data,”
in Encyclopedia of Database Systems, M. Tamer Özsu and Ling Liu, Eds., Springer, 2009, ISBN 978-0-387-35544-3 (print), ISBN 978-0-387-39940-9 (online), doi:10.1007/978-0-387-39940-9_629.
Publisher's page

Vebjorn Ljosa and Ambuj K. Singh:
“Probabilistic Querying and Mining of Biological Images,”
in Managing and Mining Uncertain Data, Charu C. Aggarwal, Ed., p. 461–482, Springer, February, 2009, ISBN 978-0-387-09689-6.
Abstract | Publisher's page

Vebjorn Ljosa and Anne E. Carpenter:
“High-throughput screens for fluorescent dye discovery,”
Trends in Biotechnology, 26(10), p. 527–530, 2008, doi:10.1016/j.tibtech.2008.06.008.
Abstract | Manuscript (PDF) | Publisher's page

Vebjorn Ljosa and Ambuj K. Singh:
“APLA: Indexing Arbitrary Probability Distributions,”
in Proceedings of the 23rd International Conference on Data Engineering (ICDE), p. 946-955, April, 2007, doi:10.1109/ICDE.2007.367940.
Abstract | Paper (PDF) | Publisher's page

Vebjorn Ljosa and Ambuj K. Singh:
“Probabilistic Segmentation and Analysis of Horizontal Cells,”
in Proceedings of the 2006 IEEE International Conference on Data Mining (ICDM), p. 980-985, December, 2006, doi:10.1109/ICDM.2006.129.
Abstract | Paper (PDF) | Slides (PDF) | Publisher's page | Software

Vebjorn Ljosa and Ambuj K. Singh:
“Probabilistic segmentation of horizontal cells,”
in Proceedings of the 2006 workshop on multiscale biological imaging, data mining & informatics (Bioimage Informatics), p. 39–40, September, 2006.
Abstract | Paper (PDF) | Software

Vebjorn Ljosa, Arnab Bhattacharya, and Ambuj K. Singh:
“LB-Index: A Multi-Resolution Index Structure for Images,”
in Proceedings of the 22nd International Conference on Data Engineering (ICDE), April, 2006, doi:10.1109/ICDE.2006.85.
Peer-reviewed short paper and Poster.
Paper (PDF) | Publisher's page | Data

Vebjorn Ljosa, Arnab Bhattacharya, and Ambuj K. Singh:
“Indexing Spatially Sensitive Distance Measures Using Multi-Resolution Lower Bounds,”
in Proceedings of the 10th International Conference on Extending Database Technology (EDBT), p. 865-883, March, 2006, doi:10.1007/11687238_51.
Abstract | Paper (PDF) | Slides (PDF) | Publisher's page | Data

Arnab Bhattacharya, Vebjorn Ljosa, Jia-Yu Pan, Mark R. Verardo, Hyungjeong Yang, Christos Faloutsos, and Ambuj K. Singh:
“ViVo: Visual vocabulary construction for mining biomedical images,”
in Proceedings of the Fifth IEEE International Conference on Data Mining (ICDM), p. 50–57, November, 2005, doi:10.1109/ICDM.2005.151.
Received one of five "best student paper" awards.
Abstract | Paper (PDF) | Publisher's page

Ambuj K. Singh, Arnab Bhattacharya, and Vebjorn Ljosa:
“Current challenges in bioimage database design,”
in Proceedings of the International Workshop on Bioimage Data Mining and Informatics, IEEE Computational Systems Bioinformatics Conference (CSB), p. 375–379, August, 2005, doi:10.1109/CSBW.2005.47.
Invited talk and abstract.
Abstract | Paper (PDF) | Publisher's page

Chao-I Chen, Xiaofang Lei, Vebjorn Ljosa, Thomas A. McCloskey, Chiou-Wei Tsai, S. Rao Jammalamadaka, Joel H. Rothman, and Ambuj K. Singh:
“A Bayesian approach toward analyzing the network of genes involved in C. elegans programmed cell death,”
West Coast Worm Meeting, 2004.
Peer-reviewed abstract, talk, and poster.
Abstract | Publisher's page

Tamer Kahveci, Vebjorn Ljosa, and Ambuj K. Singh:
“Speeding up whole-genome alignment by indexing frequency vectors,”
Bioinformatics, 20(13), p. 2122–2134, 2004, doi:10.1093/bioinformatics/bth212.
Abstract | Paper (PDF) | Publisher's page | Software

Last updated: 2008-08-18